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Structural Fingerprinting of Protein Aggregates by Dynamic Nuclear Polarization-Enhanced Solid-State NMR at Natural Isotopic Abundance

Smith, Adam N ; Märker, Katharina ; Piretra, Talia ; Boatz, Jennifer C ; Matlahov, Irina ; Kodali, Ravindra ; Hediger, Sabine ; Van Der Wel, Patrick C A ; De Paëpe, Gaël

Journal of the American Chemical Society, 07 November 2018, Vol.140(44), pp.14576-14580 [Peer Reviewed Journal]

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Direct observation of the ion-pair dynamics at a protein-DNA interface by NMR spectroscopy

Anderson, Kurtis M ; Esadze, Alexandre ; Manoharan, Mariappan ; Brüschweiler, Rafael ; Gorenstein, David G ; Iwahara, Junji

Journal of the American Chemical Society, 06 March 2013, Vol.135(9), pp.3613-9 [Peer Reviewed Journal]

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C ENDOR Spectroscopy of Lipoxygenase-Substrate Complexes Reveals the Structural Basis for C-H Activation by Tunneling

Horitani, Masaki ; Offenbacher, Adam R ; Carr, Cody A Marcus ; Yu, Tao ; Hoeke, Veronika ; Cutsail, George E ; Hammes-Schiffer, Sharon ; Klinman, Judith P ; Hoffman, Brian M

Journal of the American Chemical Society, 08 February 2017, Vol.139(5), pp.1984-1997 [Peer Reviewed Journal]

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Protein dynamics. Direct observation of hierarchical protein dynamics

Lewandowski, Józef R ; Halse, Meghan E ; Blackledge, Martin ; Emsley, Lyndon Thomas, Frank (Editor)

Science (American Association for the Advancement of Science), 01 May 2015, Vol.348(6234), pp.578-81 [Peer Reviewed Journal]

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13C NMR reveals no evidence of n-π* interactions in proteins

Worley, Bradley ; Richard, Georgia ; Harbison, Gerard S ; Powers, Robert

PloS one, 2012, Vol.7(8), pp.e42075 [Peer Reviewed Journal]

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Extrinsic Tryptophans as NMR Probes of Allosteric Coupling in Membrane Proteins: Application to the A Adenosine Receptor

Eddy, Matthew T ; Gao, Zhan-Guo ; Mannes, Philip ; Patel, Nilkanth ; Jacobson, Kenneth A ; Katritch, Vsevolod ; Stevens, Raymond C ; Wüthrich, Kurt

Journal of the American Chemical Society, 05 July 2018, Vol.140(26), pp.8228-8235 [Peer Reviewed Journal]

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High resolution structural characterization of Aβ42 amyloid fibrils by magic angle spinning NMR

Colvin, Michael T ; Silvers, Robert ; Frohm, Birgitta ; Su, Yongchao ; Linse, Sara ; Griffin, Robert G

Journal of the American Chemical Society, 17 June 2015, Vol.137(23), pp.7509-18 [Peer Reviewed Journal]

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What Drives N Spin Relaxation in Disordered Proteins? Combined NMR/MD Study of the H4 Histone Tail

Kämpf, Kerstin ; Izmailov, Sergei A ; Rabdano, Sevastyan O ; Groves, Adam T ; Podkorytov, Ivan S ; Skrynnikov, Nikolai R

Biophysical journal, 18 December 2018, Vol.115(12), pp.2348-2367 [Peer Reviewed Journal]

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NMR spectroscopy of native and in vitro tissues implicates polyADP ribose in biomineralization.

Chow, W Ying ; Rajan, Rakesh ; Muller, Karin H ; Reid, David George ; Skepper, Jeremy N ; Wong, Wai Ching ; Brooks, Roger Audley ; Green, Maggie ; Bihan, Dominique ; Farndale, Richard William ; Slatter, David A ; Shanahan, Catherine M ; Duer, Melinda Jane Apollo - University of Cambridge Repository; Apollo - University of Cambridge Repository

2014

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Probing slow chemical exchange at carbonyl sites in proteins by chemical exchange saturation transfer NMR spectroscopy

Vallurupalli, Pramodh ; Kay, Lewis E

Angewandte Chemie (International ed. in English), 08 April 2013, Vol.52(15), pp.4156-9 [Peer Reviewed Journal]

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Identifying hypoxia in a newborn piglet model using urinary NMR metabolomic profiling

Skappak, Christopher ; Regush, Shana ; Cheung, Po-Yin ; Adamko, Darryl J

PloS one, 2013, Vol.8(5), pp.e65035 [Peer Reviewed Journal]

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NMR characterization of an oligonucleotide model of the miR-21 pre-element

Chirayil, Sara ; Wu, Qiong ; Amezcua, Carlos ; Luebke, Kevin J

PloS one, 2014, Vol.9(9), pp.e108231 [Peer Reviewed Journal]

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Assigning backbone NMR resonances for full length tau isoforms: efficient compromise between manual assignments and reduced dimensionality

Harbison, Nicholas W ; Bhattacharya, Shibani ; Eliezer, David

PloS one, 2012, Vol.7(4), pp.e34679 [Peer Reviewed Journal]

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Automatic peak selection by a Benjamini-Hochberg-based algorithm

Abbas, Ahmed ; Kong, Xin-Bing ; Liu, Zhi ; Jing, Bing-Yi ; Gao, Xin

PloS one, 2013, Vol.8(1), pp.e53112 [Peer Reviewed Journal]

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Effects of NMR spectral resolution on protein structure calculation

Tikole, Suhas ; Jaravine, Victor ; Orekhov, Vladislav Yu ; Güntert, Peter

PloS one, 2013, Vol.8(7), pp.e68567 [Peer Reviewed Journal]

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16
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Capturing conformational States in proteins using sparse paramagnetic NMR data

Pilla, Kala Bharath ; Leman, Julia Koehler ; Otting, Gottfried ; Huber, Thomas

PloS one, 2015, Vol.10(5), pp.e0127053 [Peer Reviewed Journal]

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17
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Characterization of intrinsically disordered prostate associated gene (PAGE5) at single residue resolution by NMR spectroscopy

Hellman, Maarit ; Tossavainen, Helena ; Rappu, Pekka ; Heino, Jyrki ; Permi, Perttu

PloS one, 2011, Vol.6(11), pp.e26633 [Peer Reviewed Journal]

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Relationship between recombinant protein expression and host metabolome as determined by two-dimensional NMR spectroscopy

Chae, Young Kee ; Kim, Seol Hyun ; Markley, John L

PloS one, 2017, Vol.12(5), pp.e0177233 [Peer Reviewed Journal]

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19
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Atomic model of the type III secretion systemneedle

Loquet, Antoine ; Sgourakis, Nikolaos ; Gupta, Rashmi ; Giller, Karin ; Riedel, Dietmar ; Goosmann, Christian ; Griesinger, Christian ; Kolbe, Michael ; Baker, David ; Becker, Stefan ; Lange, Adam

Nature, Jun 14, 2012, Vol.486(7402), pp.276-9 [Peer Reviewed Journal]

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20
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In-cell NMR characterization of the secondary structure populations of a disordered conformation of α-synuclein within E. coli cells

Waudby, Christopher A ; Camilloni, Carlo ; Fitzpatrick, Anthony W P ; Cabrita, Lisa D ; Dobson, Christopher M ; Vendruscolo, Michele ; Christodoulou, John

PloS one, 2013, Vol.8(8), pp.e72286 [Peer Reviewed Journal]

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21
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Catalytic analysis of APOBEC3G involving real-time NMR spectroscopy reveals nucleic acid determinants for deamination

Kamba, Keisuke ; Nagata, Takashi ; Katahira, Masato

PloS one, 2015, Vol.10(4), pp.e0124142 [Peer Reviewed Journal]

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22
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Solution NMR structure and histone binding of the PHD domain of human MLL5

Lemak, Alexander ; Yee, Adelinda ; Wu, Hong ; Yap, Damian ; Zeng, Hong ; Dombrovski, Ludmila ; Houliston, Scott ; Aparicio, Samuel ; Arrowsmith, Cheryl H

PloS one, 2013, Vol.8(10), pp.e77020 [Peer Reviewed Journal]

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23
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NMR insights into folding and self-association of Plasmodium falciparum P2

Mishra, Pushpa ; Das, Sudipta ; Panicker, Lata ; Hosur, Madhusoodan V ; Sharma, Shobhona ; Hosur, Ramakrishna V

PloS one, 2012, Vol.7(5), pp.e36279 [Peer Reviewed Journal]

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24
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1H-NMR-based metabolic analysis of human serum reveals novel markers of myocardial energy expenditure in heart failure patients

Du, Zhiyong ; Shen, Anna ; Huang, Yuli ; Su, Liang ; Lai, Wenyan ; Wang, Peng ; Xie, Zhibing ; Xie, Zhiquan ; Zeng, Qingchun ; Ren, Hao ; Xu, Dingli

PloS one, 2014, Vol.9(2), pp.e88102 [Peer Reviewed Journal]

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25
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NMR spectroscopy of macrophages loaded with native, oxidized or enzymatically degraded lipoproteins

Ramm Sander, Paul ; Peer, Markus ; Grandl, Margot ; Bogdahn, Ulrich ; Schmitz, Gerd ; Kalbitzer, Hans Robert

PloS one, 2013, Vol.8(2), pp.e56360 [Peer Reviewed Journal]

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26
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Robust, integrated computational control of NMR experiments to achieve optimal assignment by ADAPT-NMR

Bahrami, Arash ; Tonelli, Marco ; Sahu, Sarata C ; Singarapu, Kiran K ; Eghbalnia, Hamid R ; Markley, John L

PloS one, 2012, Vol.7(3), pp.e33173 [Peer Reviewed Journal]

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27
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Insights into the mechanism of ligand binding to octopine dehydrogenase from Pecten maximus by NMR and crystallography

Smits, Sander H J ; Meyer, Tatu ; Mueller, Andre ; Van Os, Nadine ; Stoldt, Matthias ; Willbold, Dieter ; Schmitt, Lutz ; Grieshaber, Manfred K

PloS one, 19 August 2010, Vol.5(8), pp.e12312 [Peer Reviewed Journal]

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28
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Functional and structural insights of a Staphylococcus aureus apoptotic-like membrane peptide from a toxin-antitoxin module

Sayed, Nour ; Nonin-Lecomte, Sylvie ; Rety, Stephane ; Felden, Brice Lefevre, Annick (Editor)

Journal of Biological Chemistry, 21 December 2012, Vol.287(52), pp.43454-63 [Peer Reviewed Journal]

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29
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Atomic-resolution dynamics on the surface of amyloid-[Beta] protofibrils probed by solution NMR

Fawzi, Nicolas ; Ying, Jinfa ; Ghirlando, Rodolfo ; Torchia, Dennis ; Clore, G

Nature, Dec 8, 2011, Vol.480(7376), pp.268-72 [Peer Reviewed Journal]

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30
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Databases fight funding cuts

Baker, Monya

Nature, Sep 6, 2012, Vol.489(7414), p.19 [Peer Reviewed Journal]

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31
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Visualizing transient low-populated structures of RNA

Dethoff, Elizabeth ; Petzold, Katja ; Chugh, Jeetender ; Casiano-Negroni, Anette ; Al-Hashimi, Hashim

Nature, Nov 29, 2012, Vol.491(7426), pp.724-8 [Peer Reviewed Journal]

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32
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Unusual architecture of the p7 channel from hepatitis C virus

Ouyang, Bo ; Xie, Shiqi ; Berardi, Marcelo ; Zhao, Xinhao ; Dev, Jyoti ; Yu, Wenjing ; Sun, Bing ; Chou, James

Nature, Jun 27, 2013, Vol.498(7455), pp.521-5 [Peer Reviewed Journal]

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33
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A generalized approach for NMR studies of lipid-protein interactions based on sparse fluorination of acyl chains.

De Biasio, Alfredo ; Ibáñez de Opakua, Alain ; Bostock, Mark ; Nietlispach, Daniel ; Diercks, Tammo ; Blanco, Francisco J Apollo - University of Cambridge Repository; Apollo - University of Cambridge Repository

2018

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Integrating NMR, SAXS, and Atomistic Simulations: Structure and Dynamics of a Two-Domain Protein

Debiec, Karl T ; Whitley, Matthew J ; Koharudin, Leonardus M I ; Chong, Lillian T ; Gronenborn, Angela M

Biophysical journal, 27 February 2018, Vol.114(4), pp.839-855 [Peer Reviewed Journal]

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How accurate are accurate force-fields for B-DNA?

Dans, Pablo D ; Ivani, Ivan ; Hospital, Adam ; Portella, Guillem ; González, Carlos ; Orozco, Modesto Apollo - University of Cambridge Repository; Apollo - University of Cambridge Repository

2017

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Solid-State NMR Spectroscopy on Cellular Preparations Enhanced by Dynamic Nuclear Polarization

Renault, Marie ; Pawsey, Shane ; Bos, Martine P. ; Koers, Eline J. ; Nand, Deepak ; Tommassen-Vanboxtel, Ria ; Rosay, Melanie ; Tommassen, Jan ; Maas, Werner E. ; Baldus, Marc

Angewandte Chemie, Mar 19, 2012, Vol.51(12), pp.2998-3001 [Peer Reviewed Journal]

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