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Positive selection at the protein network periphery: evaluation in terms of structural constraints and cellular context

Kim, Philip M ; Korbel, Jan O ; Gerstein, Mark B

Proceedings of the National Academy of Sciences of the United States of America, 18 December 2007, Vol.104(51), pp.20274-9 [Peer Reviewed Journal]

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2
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A Novel Framework for the Comparative Analysis of Biological Networks (Comparative Alignment of Biological Networks)

Pache, Roland A ; Aloy, Patrick Kim, Philip M. (Editor)

PLoS ONE, 2012, Vol.7(2), p.e31220 [Peer Reviewed Journal]

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Differential Trends in the Codon Usage Patterns in HIV-1 Genes (Codon Usage Pattern of HIV-1 Genes)

Pandit, Aridaman ; Sinha, Somdatta Kim, Philip (Editor)

PLoS ONE, 2011, Vol.6(12), p.e28889 [Peer Reviewed Journal]

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Method to generate highly stable D-amino acid analogs of bioactive helical peptides using a mirror image of the entire PDB

Garton, Michael ; Nim, Satra ; Stone, Tracy A ; Wang, Kyle Ethan ; Deber, Charles M ; Kim, Philip M

Proceedings of the National Academy of Sciences of the United States of America, 13 February 2018, Vol.115(7), pp.1505-1510 [Peer Reviewed Journal]

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5
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Disordered Binding Regions and Linear Motifs—Bridging the Gap between Two Models of Molecular Recognition (Disordered Binding Regions and Linear Motifs)

Mészáros, Bálint ; Dosztányi, Zsuzsanna ; Simon, István Kim, Philip M. (Editor)

2012, Vol.7(10), p.e46829 [Peer Reviewed Journal]

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Graphene barristor, a triode device with a gate-controlled Schottky barrier

Yang, Heejun ; Heo, Jinseong ; Park, Seongjun ; Song, Hyun Jae ; Seo, David H ; Byun, Kyung-Eun ; Kim, Philip ; Yoo, Inkyeong ; Chung, Hyun-Jong ; Kim, Kinam

Science (New York, N.Y.), 01 June 2012, Vol.336(6085), pp.1140-3 [Peer Reviewed Journal]

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Dirac electrons in a dodecagonal graphene quasicrystal

Ahn, Sung Joon ; Moon, Pilkyung ; Kim, Tae-Hoon ; Kim, Hyun-Woo ; Shin, Ha-Chul ; Kim, Eun Hye ; Cha, Hyun Woo ; Kahng, Se-Jong ; Kim, Philip ; Koshino, Mikito ; Son, Young-Woo ; Yang, Cheol-Woong ; Ahn, Joung Real

Science (New York, N.Y.), 24 August 2018, Vol.361(6404), pp.782-786 [Peer Reviewed Journal]

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Tailoring electrical transport across grain boundaries in polycrystalline graphene

Tsen, Adam W ; Brown, Lola ; Levendorf, Mark P ; Ghahari, Fereshte ; Huang, Pinshane Y ; Havener, Robin W ; Ruiz-Vargas, Carlos S ; Muller, David A ; Kim, Philip ; Park, Jiwoong

Science (New York, N.Y.), 01 June 2012, Vol.336(6085), pp.1143-6 [Peer Reviewed Journal]

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Observation of the Dirac fluid and the breakdown of the Wiedemann-Franz law in graphene

Crossno, Jesse Dylan ; Shi, Jing ; Wang, Ke ; Liu, Xiaomeng ; Harzheim, Achim ; Lucas, Andrew James ; Sachdev, Subir ; Kim, Philip ; Taniguchi, T. ; Watanabe, K. ; Ohki, T. A. ; Fong, K. C.

Crossno, J., J. K. Shi, K. Wang, X. Liu, A. Harzheim, A. Lucas, S. Sachdev, et al. 2016. “Observation of the Dirac Fluid and the Breakdown of the Wiedemann-Franz Law in Graphene.” Science 351 (6277) (February 11): 1058–1061. doi:10.1126/science.aad0343. [Peer Reviewed Journal]

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Reducing False-Positive Prediction of Minimotifs with a Genetic Interaction Filter (Reducing False-Positive Prediction of Minimotifs)

Merlin, Jerlin C ; Rajasekaran, Sanguthevar ; Mi, Tian ; Schiller, Martin R Kim, Philip M. (Editor)

PLoS ONE, 2012, Vol.7(3), p.e32630 [Peer Reviewed Journal]

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Heterointerface effects in the electrointercalation of van der Waals heterostructures

Bediako, D Kwabena ; Rezaee, Mehdi ; Yoo, Hyobin ; Larson, Daniel T ; Zhao, S Y Frank ; Taniguchi, Takashi ; Watanabe, Kenji ; Brower-Thomas, Tina L ; Kaxiras, Efthimios ; Kim, Philip

Nature, June 2018, Vol.558(7710), pp.425-429 [Peer Reviewed Journal]

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12
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Elucidation of the binding preferences of peptide recognition modules: SH3 and PDZ domains

Teyra, Joan ; Sidhu, Sachdev S. ; Kim, Philip M.

FEBS Letters, 14 August 2012, Vol.586(17), pp.2631-2637 [Peer Reviewed Journal]

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13
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Atomic lattice disorder in charge-density-wave phases of exfoliated dichalcogenides (1T-TaS2)

Hovden, Robert ; Tsen, Adam W ; Liu, Pengzi ; Savitzky, Benjamin H ; El Baggari, Ismail ; Liu, Yu ; Lu, Wenjian ; Sun, Yuping ; Kim, Philip ; Pasupathy, Abhay N ; Kourkoutis, Lena F

Proceedings of the National Academy of Sciences of the United States of America, 11 October 2016, Vol.113(41), pp.11420-11424 [Peer Reviewed Journal]

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Structure and control of charge density waves in two-dimensional 1T-TaS 2

Tsen, Adam W. ; Hovden, Robert ; Wang, Dennis ; Kim, Young Duck ; Okamoto, Junichi ; Spoth, Katherine A. ; Liu, Yu ; Lu, Wenjian ; Sun, Yuping ; Hone, James C. ; Kourkoutis, Lena F. ; Kim, Philip ; Pasupathy, Abhay N.

Tsen, Adam W., Robert Hovden, Dennis Wang, Young Duck Kim, Junichi Okamoto, Katherine A. Spoth, Yu Liu, et al. 2015. “ Structure and Control of Charge Density Waves in Two-Dimensional 1T-TaS 2 .” Proc Natl Acad Sci USA 112 (49) (November 23): 15054–15059. doi:10.1073/pnas.1512092112. [Peer Reviewed Journal]

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15
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Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes

Ivarsson, Ylva ; Arnold, Roland ; Mclaughlin, Megan ; Nim, Satra ; Joshi, Rakesh ; Ray, Debashish ; Liu, Bernard ; Teyra, Joan ; Pawson, Tony ; Moffat, Jason ; Li, Shawn Shun-Cheng ; Sidhu, Sachdev S ; Kim, Philip M

Proceedings of the National Academy of Sciences of the United States of America, 18 February 2014, Vol.111(7), pp.2542-7 [Peer Reviewed Journal]

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16
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Elucidation of the binding preferences of peptide recognition modules: SH3 and PDZ domains

Teyra, Joan ; Sidhu, Sachdev S. ; Kim, Philip M.

FEBS Letters, 14 August 2012, Vol.586(17), pp.2631-2637 [Peer Reviewed Journal]

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17
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Visualizing individual nitrogen dopants in monolayer graphene

Zhao, Liuyan ; He, Rui ; Rim, Kwang Taeg ; Schiros, Theanne ; Kim, Keun Soo ; Zhou, Hui ; Gutiérrez, Christopher ; Chockalingam, S P ; Arguello, Carlos J ; Pálová, Lucia ; Nordlund, Dennis ; Hybertsen, Mark S ; Reichman, David R ; Heinz, Tony F ; Kim, Philip ; Pinczuk, Aron ; Flynn, George W ; Pasupathy, Abhay N

Science (New York, N.Y.), 19 August 2011, Vol.333(6045), pp.999-1003 [Peer Reviewed Journal]

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18
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Nanoscale atoms in solid-state chemistry

Roy, Xavier ; Lee, Chul-Ho ; Crowther, Andrew C ; Schenck, Christine L ; Besara, Tiglet ; Lalancette, Roger A ; Siegrist, Theo ; Stephens, Peter W ; Brus, Louis E ; Kim, Philip ; Steigerwald, Michael L ; Nuckolls, Colin

Science (New York, N.Y.), 12 July 2013, Vol.341(6142), pp.157-60 [Peer Reviewed Journal]

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19
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Tunable fractional quantum Hall phases in bilayer graphene

Maher, P. ; Wang, L. ; Gao, Y. ; Forsythe, C. ; Taniguchi, T. ; Watanabe, K. ; Abanin, Dmitry ; Papi , Z. ; Cadden-Zimansky, P. ; Hone, J. ; Kim, Philip ; Dean, C. R.

Quick submit: 2015-08-14T14:32:32-04:00 [Peer Reviewed Journal]

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20
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The evolutionary landscape of alternative splicing in vertebrate species

Barbosa-Morais, Nuno L ; Irimia, Manuel ; Pan, Qun ; Xiong, Hui Y ; Gueroussov, Serge ; Lee, Leo J ; Slobodeniuc, Valentina ; Kutter, Claudia ; Watt, Stephen ; Colak, Recep ; Kim, Taehyung ; Misquitta-Ali, Christine M ; Wilson, Michael D ; Kim, Philip M ; Odom, Duncan T ; Frey, Brendan J ; Blencowe, Benjamin J

Science (New York, N.Y.), 21 December 2012, Vol.338(6114), pp.1587-93 [Peer Reviewed Journal]

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21
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The role of surface oxygen in the growth of large single-crystal graphene on copper

Hao, Yufeng ; Bharathi, M S ; Wang, Lei ; Liu, Yuanyue ; Chen, Hua ; Nie, Shu ; Wang, Xiaohan ; Chou, Harry ; Tan, Cheng ; Fallahazad, Babak ; Ramanarayan, H ; Magnuson, Carl W ; Tutuc, Emanuel ; Yakobson, Boris I ; Mccarty, Kevin F ; Zhang, Yong-Wei ; Kim, Philip ; Hone, James ; Colombo, Luigi ; Ruoff, Rodney S

Science (New York, N.Y.), 08 November 2013, Vol.342(6159), pp.720-3 [Peer Reviewed Journal]

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22
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Co-Inheritance Analysis within the Domains of Life Substantially Improves Network Inference by Phylogenetic Profiling

Shin, Junha ; Lee, Insuk Kim, Philip M. (editor)

PLoS ONE, 2015, Vol.10(9) [Peer Reviewed Journal]

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23
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A computational approach for designing D-proteins with non-canonical amino acid optimised binding affinity

Garton, Michael ; Sayadi, Maryam ; Kim, Philip

PLoS One, Nov 2017, Vol.12(11), p.e0187524 [Peer Reviewed Journal]

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24
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Protein Disorder and Short Conserved Motifs in Disordered Regions Are Enriched near the Cytoplasmic Side of Single-Pass Transmembrane Proteins (Proteins Disorder in Human Membrane Proteins)

Stavropoulos, Ilias ; Khaldi, Nora ; Davey, Norman E ; O’Brien, Kevin ; Martin, Finian ; Shields, Denis C Kim, Philip M. (Editor)

2012, Vol.7(9), p.e44389 [Peer Reviewed Journal]

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25
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Single Electron Transistor with Single Aromatic Ring Molecule Covalently Connected to Graphene Nanogaps

Xu, Qizhi ; Scuri, Giovanni ; Mathewson, Carly ; Kim, Philip ; Nuckolls, Colin ; Bouilly, Delphine

Nano letters, 13 September 2017, Vol.17(9), pp.5335-5341 [Peer Reviewed Journal]

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26
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Synthesis and electrical characterization of magnetic bilayer graphene intercalate

Kim, Namdong ; Kim, Kwang S ; Jung, Naeyoung ; Brus, Louis ; Kim, Philip

Nano letters, 09 February 2011, Vol.11(2), pp.860-5 [Peer Reviewed Journal]

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27
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Modes of Interaction between Individuals Dominate the Topologies of Real World Networks

Lee, Insuk ; Kim, Eiru ; Marcotte, Edward M Kim, Philip M. (editor)

PLoS ONE, 2015, Vol.10(3) [Peer Reviewed Journal]

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28
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Nanotube nanotweezers

Kim, Philip ; Lieber, Charles

Science, Dec 10, 1999, Vol.286(5447), pp.2148-2150 [Peer Reviewed Journal]

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29
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A structural approach reveals how neighbouring C2H2 zinc fingers influence DNA binding specificity

Garton, Michael ; Najafabadi, Hamed S ; Schmitges, Frank W ; Radovani, Ernest ; Hughes, Timothy R ; Kim, Philip M

Nucleic acids research, 30 October 2015, Vol.43(19), pp.9147-57 [Peer Reviewed Journal]

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30
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Diameter dependence of the transport properties of antimony telluride nanowires

Zuev, Yuri M ; Lee, Jin Seok ; Galloy, Clément ; Park, Hongkun ; Kim, Philip

Nano letters, 11 August 2010, Vol.10(8), pp.3037-40 [Peer Reviewed Journal]

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31
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Energy loss of the electron system in individual single-walled carbon nanotubes

Santavicca, Daniel F ; Chudow, Joel D ; Prober, Daniel E ; Purewal, Meninder S ; Kim, Philip

Nano letters, 10 November 2010, Vol.10(11), pp.4538-43 [Peer Reviewed Journal]

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32
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Interpreting protein networks with three-dimensional structures

Teyra, Joan ; Kim, Philip M

Nature methods, January 2013, Vol.10(1), pp.43-4 [Peer Reviewed Journal]

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33
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Data driven flexible backbone protein design

Sun, Mark G. F ; Kim, Philip M Deane, Charlotte M. (editor)

PLoS Computational Biology, 2017, Vol.13(8) [Peer Reviewed Journal]

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34
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A Statistical Framework for Improving Genomic Annotations of Prokaryotic Essential Genes

Deng, Jingyuan ; Su, Shengchang ; Lin, Xiaodong ; Hassett, Daniel J ; Lu, Long Jason Kim, Philip M. (editor)

PLoS ONE, 2013, Vol.8(3) [Peer Reviewed Journal]

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35
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Multilayer graphene grown by precipitation upon cooling of nickel on diamond

García, Jorge M. ; He, Rui ; Jiang, Mason P. ; Kim, Philip ; Pfeiffer, Loren N. ; Pinczuk, Aron

Carbon, 2011, Vol.49(3), pp.1006-1012 [Peer Reviewed Journal]

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36
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Midline Extraperitoneal Approach for Retroperitoneal Lymph Node Dissection for Testicular Germ Cell Tumor

Kim, Philip ; Syan-Bhanvadia, Sumeet ; Djaladat, Hooman ; Faber, Ken ; Tadros, Nicholas N. ; Nichols, Craig ; Daneshmand, Siamak

Urology, October 2012, Vol.80(4), pp.941-945 [Peer Reviewed Journal]

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37
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Gender relations in global agri-food value chains – a review

Schumacher, Kim Philip

DIE ERDE: Journal of the Geographical Society of Berlin, 01 September 2014, Vol.145(3), pp.127-134

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