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Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0

The, Matthew ; Maccoss, M. J. ; Noble, W. S. ; Käll, Lukas

Journal of the American Society for Mass Spectrometry, 2016, Vol.27(11), pp.1719-1727 [Peer Reviewed Journal]

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Antiviral Efficacy upon Administration of a HepDirect Prodrug of 2'-C-Methylcytidine to Hepatitis C Virus-Infected Chimpanzees
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Antiviral Efficacy upon Administration of a HepDirect Prodrug of 2'-C-Methylcytidine to Hepatitis C Virus-Infected Chimpanzees

Carroll, S. S. ; Koeplinger, K. ; Vavrek, M. ; Zhang, N. R. ; Handt, L. ; Maccoss, M. ; Olsen, D. B. ; Reddy, K. R. ; Sun, Z. ; van Poelje, P. D. ; Fujitaki, J. M. ; Boyer, S. H. ; Linemeyer, D. L. ; Hecker, S. J. ; Erion, M. D.

Antimicrobial Agents and Chemotherapy, 08/01/2011, Vol.55(8), pp.3854-3860 [Peer Reviewed Journal]

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3
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Comparative proteomics reveals deficiency of NHE-1 (SLC9A1) in RBCs from beta-adducin knockout mice

Wooden, J ; Finney, G ; Maccoss, M ; Gilligan, D

Transfusion clinique et biologique, 2010, Vol.17(3), pp.200-200 [Peer Reviewed Journal]

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4
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Evaluation and optimization of ion-current ratio measurements by selected-ion-monitoring mass spectrometry

Maccoss, M J ; Toth, M J ; Matthews, D E

Analytical chemistry, 01 July 2001, Vol.73(13), pp.2976-84 [Peer Reviewed Journal]

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5
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Measurement of homocysteine concentrations and stable isotope tracer enrichments in human plasma

Maccoss, M J ; Fukagawa, N K ; Matthews, D E

Analytical chemistry, 15 October 1999, Vol.71(20), pp.4527-33 [Peer Reviewed Journal]

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6
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Synthesis and structure determination of 8(-13)Cguanosine 5'-diphosphate

Poe, M ; Germershausen, J I ; Maccoss, M

Analytical biochemistry, 01 August 1987, Vol.164(2), pp.450-6 [Peer Reviewed Journal]

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7
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Protein interaction networks at the host-microbe interface in , the insect vector of the citrus greening pathogen

Ramsey, J S ; Chavez, J D ; Johnson, R ; Hosseinzadeh, S ; Mahoney, J E ; Mohr, J P ; Robison, F ; Zhong, X ; Hall, D G ; Maccoss, M ; Bruce, J ; Cilia, M

Royal Society open science, February 2017, Vol.4(2), pp.160545 [Peer Reviewed Journal]

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8
Robust Antiviral Efficacy upon Administration of a Nucleoside Analog to Hepatitis C Virus-Infected Chimpanzees
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Robust Antiviral Efficacy upon Administration of a Nucleoside Analog to Hepatitis C Virus-Infected Chimpanzees

Carroll, S. S. ; Ludmerer, S. ; Handt, L. ; Koeplinger, K. ; Zhang, N. R. ; Graham, D. ; Davies, M.-E. ; Maccoss, M. ; Hazuda, D. ; Olsen, D. B.

Antimicrobial Agents and Chemotherapy, 03/01/2009, Vol.53(3), pp.926-934 [Peer Reviewed Journal]

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9
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Characterization of a novel, non-peptidyl antagonist of the human glucagon receptor

Cascieri, M A ; Koch, G E ; Ber, E ; Sadowski, S J ; Louizides, D ; De Laszlo, S E ; Hacker, C ; Hagmann, W K ; Maccoss, M ; Chicchi, G G ; Vicario, P P

The Journal of biological chemistry, 26 March 1999, Vol.274(13), pp.8694-7 [Peer Reviewed Journal]

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10
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Anthrax lethal factor inhibition

Shoop, W L ; Xiong, Y ; Wiltsie, J ; Woods, A ; Guo, J ; Pivnichny, J V ; Felcetto, T ; Michael, B F ; Bansal, A ; Cummings, R T ; Cunningham, B R ; Friedlander, A M ; Douglas, C M ; Patel, S B ; Wisniewski, D ; Scapin, G ; Salowe, S P ; Zaller, D M ; Chapman, K T ; Scolnick, E M ; Schmatz, D M ; Bartizal, K ; Maccoss, M ; Hermes, J D

Proceedings of the National Academy of Sciences of the United States of America, 31 May 2005, Vol.102(22), pp.7958-63 [Peer Reviewed Journal]

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11
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Distinct mechanism for antidepressant activity by blockade of central substance P receptors

Kramer, M S ; Cutler, N ; Feighner, J ; Shrivastava, R ; Carman, J ; Sramek, J J ; Reines, S A ; Liu, G ; Snavely, D ; Wyatt-Knowles, E ; Hale, J J ; Mills, S G ; Maccoss, M ; Swain, C J ; Harrison, T ; Hill, R G ; Hefti, F ; Scolnick, E M ; Cascieri, M A ; Chicchi, G G ; Sadowski, S ; Williams, A R ; Hewson, L ; Smith, D ; Carlson, E J ; Hargreaves, R J ; Rupniak, N M

Science (New York, N.Y.), 11 September 1998, Vol.281(5383), pp.1640-5 [Peer Reviewed Journal]

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12
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Phospholipid derivatives of nucleoside analogs as prodrugs with enhanced catabolic stability

Matsushita, T ; Ryu, E K ; Hong, C I ; Maccoss, M

Cancer research, July 1981, Vol.41(7), pp.2707-13 [Peer Reviewed Journal]

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13
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Measurement of intracellular sulfur amino acid metabolism in humans

Maccoss, M J ; Fukagawa, N K ; Matthews, D E

American journal of physiology. Endocrinology and metabolism, June 2001, Vol.280(6), pp.E947-55 [Peer Reviewed Journal]

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14
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Evidence for antidepressant and anxiolytic activity of substance P antagonists in preclinical assays

Rupniak, N.J ; Carlson, E ; Smith, D ; Harrison, T ; Swain, C ; Cascieri, M ; Chicchi, G ; Sadowski, S ; Hale, J ; Mills, S ; Maccoss, M ; Hargreaves, R

Psychoneuroendocrinology, 2000, Vol.25, pp.S26-S26 [Peer Reviewed Journal]

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15
Inhibitory Effect of 2'-Substituted Nucleosides on Hepatitis C Virus Replication Correlates with Metabolic Properties in Replicon Cells
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Inhibitory Effect of 2'-Substituted Nucleosides on Hepatitis C Virus Replication Correlates with Metabolic Properties in Replicon Cells

Tomassini, J. E. ; Getty, K. ; Stahlhut, M. W. ; Shim, S. ; Bhat, B. ; Eldrup, A. B. ; Prakash, T. P. ; Carroll, S. S. ; Flores, O. ; Maccoss, M. ; Mcmasters, D. R. ; Migliaccio, G. ; Olsen, D. B.

Antimicrobial Agents and Chemotherapy, 05/01/2005, Vol.49(5), pp.2050-2058 [Peer Reviewed Journal]

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16
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Comparison of the modes of antiviral action of 2'-nor-deoxyguanosine and its cyclic phosphate, 2'-nor-cyclic GMP

Germershausen, J ; Bostedor, R ; Liou, R ; Field, A K ; Wagner, A F ; Maccoss, M ; Tolman, R L ; Karkas, J D

Antimicrobial agents and chemotherapy, June 1986, Vol.29(6), pp.1025-31 [Peer Reviewed Journal]

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17
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Recovery of (13)CO(2) from infused 1-(13)Cleucine and 1,2-(13)C(2)leucine in healthy humans

Toth, M J ; Maccoss, M J ; Poehlman, E T ; Matthews, D E

American journal of physiology. Endocrinology and metabolism, August 2001, Vol.281(2), pp.E233-41 [Peer Reviewed Journal]

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18
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Effects of estradiol and progesterone on body composition, protein synthesis, and lipoprotein lipase in rats

Toth, M J ; Poehlman, E T ; Matthews, D E ; Tchernof, A ; Maccoss, M J

American journal of physiology. Endocrinology and metabolism, March 2001, Vol.280(3), pp.E496-501 [Peer Reviewed Journal]

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19
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Structural optimization affording 2-(R)-(1-(R)-3, 5-bis(trifluoromethyl)phenylethoxy)-3-(S)-(4-fluoro)phenyl-4- (3-oxo-1,2,4-triazol-5-yl)methylmorpholine, a potent, orally active, long-acting morpholine acetal human NK-1 receptor antagonist

Hale, J J ; Mills, S G ; Maccoss, M ; Finke, P E ; Cascieri, M A ; Sadowski, S ; Ber, E ; Chicchi, G G ; Kurtz, M ; Metzger, J ; Eiermann, G ; Tsou, N N ; Tattersall, F D ; Rupniak, N M ; Williams, A R ; Rycroft, W ; Hargreaves, R ; Macintyre, D E

Journal of medicinal chemistry, 05 November 1998, Vol.41(23), pp.4607-14 [Peer Reviewed Journal]

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20
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2(S)-((3,5-bis(trifluoromethyl)benzyl)-oxy)-3(S)-phenyl-4- ((3-oxo-1,2,4-triazol-5-yl)methyl)morpholine (1): a potent, orally active, morpholine-based human neurokinin-1 receptor antagonist

Hale, J J ; Mills, S G ; Maccoss, M ; Shah, S K ; Qi, H ; Mathre, D J ; Cascieri, M A ; Sadowski, S ; Strader, C D ; Macintyre, D E ; Metzger, J M

Journal of medicinal chemistry, 26 April 1996, Vol.39(9), pp.1760-2 [Peer Reviewed Journal]

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21
A 7-Deaza-Adenosine Analog Is a Potent and Selective Inhibitor of Hepatitis C Virus Replication with Excellent Pharmacokinetic Properties
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A 7-Deaza-Adenosine Analog Is a Potent and Selective Inhibitor of Hepatitis C Virus Replication with Excellent Pharmacokinetic Properties

Olsen, D. B. ; Eldrup, A. B. ; Bartholomew, L. ; Bhat, B. ; Bosserman, M. R. ; Ceccacci, A. ; Colwell, L. F. ; Fay, J. F. ; Flores, O. A. ; Getty, K. L. ; Grobler, J. A. ; Lafemina, R. L. ; Markel, E. J. ; Migliaccio, G. ; Prhavc, M. ; Stahlhut, M. W. ; Tomassini, J. E. ; Maccoss, M. ; Hazuda, D. J. ; Carroll, S. S.

Antimicrobial Agents and Chemotherapy, 10/01/2004, Vol.48(10), pp.3944-3953 [Peer Reviewed Journal]

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22
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Expression and immunoaffinity purification of human inducible nitric-oxide synthase. Inhibition studies with 2-amino-5,6-dihydro-4H-1,3-thiazine

Calaycay, J R ; Kelly, T M ; Macnaul, K L ; Mccauley, E D ; Qi, H ; Grant, S K ; Griffin, P R ; Klatt, T ; Raju, S M ; Nussler, A K ; Shah, S ; Weidner, J R ; Williams, H R ; Wolfe, G C ; Geller, D A ; Billiar, T R ; Maccoss, M ; Mumford, R A ; Tocci, M J ; Schmidt, J A ; Wong, K K ; Hutchinson, N I

The Journal of biological chemistry, 08 November 1996, Vol.271(45), pp.28212-9 [Peer Reviewed Journal]

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23
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L-tryptophan urea amides as NK1/NK2 dual antagonists

Qi, H ; Shah, S K ; Cascieri, M A ; Sadowski, S J ; Maccoss, M

Bioorganic & medicinal chemistry letters, 18 August 1998, Vol.8(16), pp.2259-62 [Peer Reviewed Journal]

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24
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Comparative analysis of the transcriptome across distant species

Gerstein, MB ; Rozowsky, J ; Yan, KK ; Wang, D ; Cheng, C ; Brown, JB ; Davis, CA ; Hillier, L ; Sisu, C ; Li, JJ ; Pei, B ; Harmanci, AO ; Duff, MO ; Djebali, S ; Alexander, RP ; Alver, BH ; Auerbach, R ; Bell, K ; Bickel, PJ ; Boeck, ME ; Boley, NP ; Booth, BW ; Cherbas, L ; Cherbas, P ; Di, C ; Dobin, A ; Drenkow, J ; Ewing, B ; Fang, G ; Fastuca, M ; Feingold, EA ; Frankish, A ; Gao, G ; Good, PJ ; Guigó, R ; Hammonds, A ; Harrow, J ; Hoskins, RA ; Howald, C ; Hu, L ; Huang, H ; Hubbard, TJP ; Huynh, C ; Jha, S ; Kasper, D ; Kato, M ; Kaufman, TC ; Kitchen, RR ; Ladewig, E ; Lagarde, J ; Lai, E ; Leng, J ; Lu, Z ; MacCoss, M ; May, G ; McWhirter, R ; Merrihew, G ; Miller, DM ; Mortazavi, A ; Murad, R ; Oliver, B ; Olson, S ; Park, PJ ; Pazin, MJ ; Perrimon, N ; Pervouchine, D ; Reinke, V ; Reymond, A ; Robinson, G

2014

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25
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Phospholipid-nucleoside conjugates The aggregational characteristics and morphological aspects of selected 1-β- D-arabinofuranosylcytosine 5′-diphosphate- L-1,2-diacylglycerols

Maccoss, M ; Edwards, J.J ; Seed, T.M ; Spragg, S.P

BBA - General Subjects, 1982, Vol.719(3), pp.544-555 [Peer Reviewed Journal]

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26
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1,3,4-Trisubstituted pyrrolidine CCR5 receptor antagonists. Part 1: discovery of the pyrrolidine scaffold and determination of its stereochemical requirements

Hale, J J ; Budhu, R J ; Mills, S G ; Maccoss, M ; Malkowitz, L ; Siciliano, S ; Gould, S L ; Demartino, J A ; Springer, M S

Bioorganic & medicinal chemistry letters, 04 June 2001, Vol.11(11), pp.1437-40 [Peer Reviewed Journal]

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27
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Inhibition of stromelysin-1 (MMP-3) by P1'-biphenylylethyl carboxyalkyl dipeptides

Esser, C K ; Bugianesi, R L ; Caldwell, C G ; Chapman, K T ; Durette, P L ; Girotra, N N ; Kopka, I E ; Lanza, T J ; Levorse, D A ; Maccoss, M ; Owens, K A ; Ponpipom, M M ; Simeone, J P ; Harrison, R K ; Niedzwiecki, L ; Becker, J W ; Marcy, A I ; Axel, M G ; Christen, A J ; Mcdonnell, J ; Moore, V L ; Olszewski, J M ; Saphos, C ; Visco, D M ; Hagmann, W K

Journal of medicinal chemistry, 14 March 1997, Vol.40(6), pp.1026-40 [Peer Reviewed Journal]

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28
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Phosphorylated morpholine acetal human neurokinin-1 receptor antagonists as water-soluble prodrugs

Hale, J J ; Mills, S G ; Maccoss, M ; Dorn, C P ; Finke, P E ; Budhu, R J ; Reamer, R A ; Huskey, S E ; Luffer-Atlas, D ; Dean, B J ; Mcgowan, E M ; Feeney, W P ; Chiu, S H ; Cascieri, M A ; Chicchi, G G ; Kurtz, M M ; Sadowski, S ; Ber, E ; Tattersall, F D ; Rupniak, N M ; Williams, A R ; Rycroft, W ; Hargreaves, R ; Metzger, J M ; Macintyre, D E

Journal of medicinal chemistry, 23 March 2000, Vol.43(6), pp.1234-41 [Peer Reviewed Journal]

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29
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Substituted imidazoles as glucagon receptor antagonists

Chang, L L ; Sidler, K L ; Cascieri, M A ; De Laszlo, S ; Koch, G ; Li, B ; Maccoss, M ; Mantlo, N ; O'Keefe, S ; Pang, M ; Rolando, A ; Hagmann, W K

Bioorganic & medicinal chemistry letters, 17 September 2001, Vol.11(18), pp.2549-53 [Peer Reviewed Journal]

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30
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Antagonists of the human CCR5 receptor as anti-HIV-1 agents. Part 4: synthesis and structure-activity relationships for 1-N-(methyl)-N-(phenylsulfonyl)amino-2-(phenyl)-4-(4-(N-(alkyl)-N-(benzyloxycarbonyl)amino)piperidin-1-yl)butanes

Finke, P E ; Oates, B ; Mills, S G ; Maccoss, M ; Malkowitz, L ; Springer, M S ; Gould, S L ; Demartino, J A ; Carella, A ; Carver, G ; Holmes, K ; Danzeisen, R ; Hazuda, D ; Kessler, J ; Lineberger, J ; Miller, M ; Schleif, W A ; Emini, E A

Bioorganic & medicinal chemistry letters, 17 September 2001, Vol.11(18), pp.2475-9 [Peer Reviewed Journal]

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31
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Phospholipid-nucleoside conjugates. 5. The interaction of selected 1-beta-D-arabinofuranosylcytosine-5'-diphosphate-L-1,2-diacylglycerols with serum lipoproteins

Maccoss, M ; Edwards, J J ; Lagocki, P ; Rahman, Y E

Biochemical and biophysical research communications, 31 October 1983, Vol.116(2), pp.368-74 [Peer Reviewed Journal]

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32
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NK2 receptors mediate plasma extravasation in guinea-pig lower airways

Tousignant, C ; Chan, C C ; Guevremont, D ; Brideau, C ; Hale, J J ; Maccoss, M ; Rodger, I W

British journal of pharmacology, February 1993, Vol.108(2), pp.383-6 [Peer Reviewed Journal]

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33
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Modification of the Dittmer-Lester reagent for the detection of phospholipid derivatives on thin-layer chromatograms

Ryu, E K ; Maccoss, M

Journal of lipid research, May 1979, Vol.20(4), pp.561-3 [Peer Reviewed Journal]

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34
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Potent, orally absorbed glucagon receptor antagonists

De Laszlo, S E ; Hacker, C ; Li, B ; Kim, D ; Maccoss, M ; Mantlo, N ; Pivnichny, J V ; Colwell, L ; Koch, G E ; Cascieri, M A ; Hagmann, W K

Bioorganic & medicinal chemistry letters, 08 March 1999, Vol.9(5), pp.641-6 [Peer Reviewed Journal]

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35
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Nucleic acid related compounds. 20. Sugar, base doubly modified nucleosides at the 5'-terminal "cap" of mRNAs and in nuclear RNA

Robins, M J ; Maccoss, M ; Lee, A S

Biochemical and biophysical research communications, 17 May 1976, Vol.70(2), pp.356-63 [Peer Reviewed Journal]

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36
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The enzymatic synthesis of ATP analogues

Johnson, D ; Maccoss, M ; Narindrasorasak, S

Biochemical and biophysical research communications, 12 July 1976, Vol.71(1), pp.144-9 [Peer Reviewed Journal]

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37
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The synthesis, characterization, and preliminary biological evaluation of 1-beta-D-arabinofuranosylcytosine-5'-diphosphate-L-1,2-dipalmitin

Maccoss, M ; Ryu, E K ; Matsushita, T

Biochemical and biophysical research communications, 29 November 1978, Vol.85(2), pp.714-23 [Peer Reviewed Journal]

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38
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The novel NK 1 receptor antagonist MK–0869 (L–754,030) and its water soluble phosphoryl prodrug, L–758,298, inhibit acute and delayed cisplatin-induced emesis in ferrets

Tattersall, F.D ; Rycroft, W ; Cumberbatch, M ; Mason, G ; Tye, S ; Williamson, D.J ; Hale, J.J ; Mills, S.G ; Finke, P.E ; Maccoss, M ; Sadowski, S ; Ber, E ; Cascieri, M ; Hill, R.G ; Macintyre, D.E ; Hargreaves, R.J

Neuropharmacology, 2000, Vol.39(4), pp.652-663 [Peer Reviewed Journal]

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